Search results for " Modicana"

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Genome-wide detection of copy-number variations in local cattle breeds

2019

The aim of the present study was to identify copy-number variations (CNVs) in Cinisara (CIN) and Modicana (MOD) cattle breeds on the basis of signal intensity (logR ratio) and B allele frequency of each marker, using Illumina’s BovineSNP50K Genotyping BeadChip. The CNVs were detected with the PennCNV and SVS 8.7.0 software and were aggregated into CNV regions (CNVRs). PennCNV identified 487 CNVs in CIN that aggregated into 86 CNVRs, and 424 CNVs in MOD that aggregated into 81 CNVRs. SVS identified a total of 207 CNVs in CIN that aggregated into 39 CNVRs, and 181 CNVs in MOD that aggregated into 41 CNVRs. The CNVRs identified with the two softwares contained 29 common CNVRs in CIN and 17 co…

cinisara0303 health sciencesFuture studies0402 animal and dairy scienceBovineSNP50K BeadChip Cinisara genomic variation Modicana04 agricultural and veterinary sciencesComputational biologyBiology040201 dairy & animal scienceGenome03 medical and health sciencesBovine genomeSettore AGR/17 - Zootecnica Generale E Miglioramento GeneticoAnimal Science and ZoologyCopy-number variationgenomic variationKEGGBovineSNP50K beadchipAllele frequencyGeneGenotypingmodicana030304 developmental biologyFood Science
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